BtaEX0038088 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12501788-12505181:+
Coord C1 exon
chr22:12501788-12501988
Coord A exon
chr22:12503193-12503322
Coord C2 exon
chr22:12505024-12505181
Length
130 bp
Sequences
Splice sites
3' ss Seq
CAGACCCTTGTGTTCTACAGCCC
3' ss Score
6.58
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCTGGTTTTCCTCCAAGCCCTCCTGGTGTCCAAGAAGCATAGGGGGGAGCAGGAGGCCACGACGCTACTAAAGGAGGCCGCCGAGCTGCACTTCTCCAGCATGCAGGCCCTCCCCATGAGCTCTGAATACTTGGAACGGCTCGACCCCATCTTCCTGGTCTGCATCGCCAAGGAGTACCTGGTCTTCTGCCCCAAGCAG
Seq A exon
CCCCGGTCTCCAGGCCAGATCGTGTCTCCTCTTCTTAAGCAAGTCGCTGCCATCTTGAATCCTGTAGTCAAGGTGGCACCAGCCCTGATTGAGCCGCTGTATGTGATGGCCCAGGTCAAGTATCTCTCAG
Seq C2 exon
GGGAGTTAGAGCATGCCCAGAGCACCCTGCAGCGTTGCCTGGAGCTGGACCCCACCTCCGTGGACACCCACCTCCTCATGGCTCAGATCTACCTGGCTCAGGGCAACTTTGCCATGTGCTCCCACTCCTTGGAGCTGGGCGTCAGCCACAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(23.8=34.1)
C2:
PF134141=TPR_11=PD(74.6=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGACGCTACTAAAGGAGGC
R:
TGAGCCAGGTAGATCTGAGCC
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development