RnoEX6038271 @ rn6
Exon Skipping
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128639290-128642810:+
Coord C1 exon
chr8:128639290-128639490
Coord A exon
chr8:128640088-128640217
Coord C2 exon
chr8:128642653-128642810
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATCTCCTGGTGTTCCCACAGCCC
3' ss Score
9.54
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGCTGGTTTTCCTGCAAGCCCTTGTAGCAGCTAAGAAGCAAAAGCTGGAGCAAGAGGCCACGGCGCTCCTGAAGGAGGCAGTGGAACTGCATTTCTCCAACATGCAGGGCCTGGCCCTGAGCCCCGAGTATTTTGAAAAGCTGGACCCCCTCTTTCTGGTCTGCATCGCCAAGGAGTATCTGCATTTCTGCCCGAAGCAG
Seq A exon
CCCCGGTCACCCGGCCAGCTCGTGTCTCCACTTCTTAAACAAGTCGCCATGATCTTGAGCCCTGTAGTAAAGGTGGCCCCGGCCATGATGGAGCCACTGTTTGTGACAGCTCAGGTCAAGTTCCTCTCAG
Seq C2 exon
GAGAGCTGGAGAACGCGCAGAGCACCCTGCAGCGCTGCCTGGAGCTGGACCCCACCTTTGTGGACGCTCACCTCCTCATGTCCCAGATCTACCTGGCCCAGGGCAACTTCGCCATGTGCTCCCACTGTCTAGAGCTGGGTGTCAGCCACAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089-'14-14,'14-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF128952=Apc3=PU(2.3=4.5)
C2:
PF128952=Apc3=FE(60.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCTCCAACATGCAGGGCC
R:
ACACCCAGCTCTAGACAGTGG
Band lengths:
252-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]