BtaEX0040247 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37171569-37184726:+
Coord C1 exon
chr2:37171569-37171753
Coord A exon
chr2:37180970-37181062
Coord C2 exon
chr2:37184633-37184726
Length
93 bp
Sequences
Splice sites
3' ss Seq
TAACAAATTTACATTTTTAGGTG
3' ss Score
9.16
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATGTGCTAGTGTTAAGGATGGCTCCTTAGTGGCCTGTGCGTTTTTTCCTCCTGGAAACCTCTTTGTCACTGGCTCCTCATGTGGTGATTTAACAGTGTGGGATGATAAAATGAGGTGTCTGCACAGTGAAAAAGCACATGATCTTGGAATTACCTGCTGTGACTTTTCTTCACAACCAGTTCCTG
Seq A exon
GTGGAGAACGAGGTCTTCAGTTCTTTCAGTTGGCATCATGTGGTCAAGATTGCCAGATCAAAATTTGGGTTATTTCTTTTATCCATATCTTAG
Seq C2 exon
GTTTTGAATTAAAATATAAAAGTACGCTGACCGGACACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCTCATGATGGGCAGATGTTAGTTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
A:
PF0040027=WD40=PD(45.8=68.8)
C2:
PF0040027=WD40=PU(71.8=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTTTGTCACTGGCTCCT
R:
CAGAACAGGAGCACAGTGTCC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development