RnoEX6016950 @ rn6
Exon Skipping
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45946548-45951360:-
Coord C1 exon
chr3:45951176-45951360
Coord A exon
chr3:45948177-45948269
Coord C2 exon
chr3:45946548-45946641
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTCAACATTTTTTAGGCG
3' ss Score
7.59
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTGTGGTAGTGTCAAGGACAGCTCATTGGTGGCCTGTGCGTTTTCTCCTGACGGAGGCCTCCTTGTCACTGGCTCCTCGGGAGGGGACTTGACAGTGTGGGATGACAGAATGAGGTGTCTGCACAGCGAGAAGGCACACGACCTCGGGATCACCTGCTGCAGCTTTTCCTCACAGCCTCTCTCTG
Seq A exon
GCGGAGAGCACGGCCTTCAGCTTTACCGATTGGCATCGTGTGGTCAAGACTGTGAGATCAAACTCTGGGTTGTTTCTTTTACCCGTGTCTTAG
Seq C2 exon
GCTTTGAGTTAAAATATAGAAGCACACTAAGTGGGCACTGTGCCCCTGTTCTGGCCTGTGCCTTTTCCCACGATGGACAGATGCTTGCATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990-'9-7,'9-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
A:
PF0040027=WD40=PD(45.8=68.8)
C2:
PF0040027=WD40=PU(71.8=87.5)
Main Skipping Isoform:
ENSRNOT00000008168fB16571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTTGACAGTGTGGGATG
R:
CTGTCCATCGTGGGAAAAGGC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]