DreEX6020966 @ danRer10
Exon Skipping
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11775269-11777588:+
Coord C1 exon
chr6:11775269-11775456
Coord A exon
chr6:11777145-11777234
Coord C2 exon
chr6:11777495-11777588
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCTGTCTTTACCAGGCA
3' ss Score
10.93
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
GACCGGTGTGGTGAATGACACCAGTATAGTGGCCTGCTCTTTCACTCCCTGTGGTCAGATGTTCATCACCGGCTCCACATACGGTGACCTGCGTCTGTGGGACCTGAACATGAATCATCTTCATGCGGAGAAGAATGCCCATGACCTGGGGGTCTCCTGTGCTCAGTTTGCTCCTAAGATGATGAAGG
Seq A exon
GCACAGATGGCTGTGTTCAGTTTCGACTGGCCTCATGTGGACAGGACAGTCTGCTGAAGATATGGATTGTTTCTCTTTTGCCTTCTGCAG
Seq C2 exon
GCATTAAGATGCAGCTCGCTCACACTCTGACAGGACAGTCTGCTCCGGTTCTGTCCTGTGCTTACTCTCCTGATGGACAGATGCTGGTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418-'2-3,'2-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(51.1=35.9)
A:
PF0040027=WD40=PD(46.7=67.7)
C2:
PF0040027=WD40=PU(71.8=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGTTCATCACCGGCTCC
R:
GGAGCAGACTGTCCTGTCAGA
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]