MmuEX6101450 @ mm10
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59873216-59876851:-
Coord C1 exon
chr2:59876667-59876851
Coord A exon
chr2:59874239-59874328
Coord C2 exon
chr2:59873216-59873309
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTTTGCTGTTTTTAGGCG
3' ss Score
9.26
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
GTGTGGTAGTGTCAAGGATAGCTCATTGGTGGCCTGTGCGTTTTCTCCCGATGGAGGCCTCTTTGTCACTGGCTCCTCGGGCGGGGACTTGACAGTGTGGGATGACAGAATGAGGTGTCTACACAGCGAGAAGGCGCACGATCTCGGGATCACCTGCTGCAGCTTTTCCTCACAGCCTCTCTCTG
Seq A exon
GCGGAGAAGGCCTCCAGTCTTACCAGTTGGCGTCATGTGGTCAAGACTGTGAAATCAAACTCTGGGCTGTTACTATTACCCGTGTCTTAG
Seq C2 exon
GCTTTGAATTAAAATATAAAAGCACACTAAGTGGGCACTGCGCCCCTGTTCTGGCCTGTGCTTTTTCACATGATGGAAAGATGCTTGCATCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-'7-10,'7-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
A:
PF0040027=WD40=PD(45.8=71.0)
C2:
PF0040027=WD40=PU(73.7=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGAGGCCTCTTTGTCAC
R:
CAGTGCCCACTTAGTGTGCTT
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types