GgaEX1064131 @ galGal4
Exon Skipping
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36039090-36046900:-
Coord C1 exon
chr7:36046498-36046900
Coord A exon
chr7:36041317-36041409
Coord C2 exon
chr7:36039090-36039123
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTTAATTTTATCAGATG
3' ss Score
7.25
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
Seq A exon
ATGGGGAACATGCATCCGGATGCTTCCAGATGGCATCTTGTGGTCAAGATAATAAGATCAAAGTCTGGTTTATTTTGTTTGCAGACTTCTTAG
Seq C2 exon
GTCTGTGGACAAGTGTGTCATAATATATGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574_MULTIEX1-2/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
A:
PF0040027=WD40=PD(45.8=68.8)
C2:
PF0040027=WD40=PD(26.3=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]