BtaEX0040249 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37184633-37208703:+
Coord C1 exon
chr2:37184633-37184726
Coord A exon
chr2:37197977-37198017
Coord C2 exon
chr2:37208563-37208703
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTGTTATTTTTTCAGAAT
3' ss Score
10.82
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTTTTGAATTAAAATATAAAAGTACGCTGACCGGACACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCTCATGATGGGCAGATGTTAGTTTCAGG
Seq A exon
AATACTGAGAATATACTTCACACCCTGACTCAGCACACCAG
Seq C2 exon
AATCTCTAGGGCTGCGTAGTAAAGTTCTAAGGAAAATTGAAGAACTGAGGACAAAGGTGAAAACCCTTTCTTCTGAAATTCCTGATGAATTTATATGTCCAATAACTAGGGAGCTTATGAAAGATCCTATCATCGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184_MULTIEX2-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(71.8=87.5)
A:
PF0040027=WD40=PU(28.2=78.6)
C2:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGTGCTCCTGTTCTGG
R:
AGAAAGGGTTTTCACCTTTGTCCT
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development