GgaEX0018998 @ galGal4
Exon Skipping
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36037286-36039123:-
Coord C1 exon
chr7:36039090-36039123
Coord A exon
chr7:36037478-36037518
Coord C2 exon
chr7:36037286-36037392
Length
41 bp
Sequences
Splice sites
3' ss Seq
CAAATGTTCTTTTTTTACAGAAT
3' ss Score
9.08
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCTGTGGACAAGTGTGTCATAATATATGAGACT
Seq A exon
AATACTGGCAATATCCTTCATACTTTGTCTCAGCATACTAG
Seq C2 exon
ATATGTCACAACTTGTGCCTTTGCTCCATGTAGTCTCTTCCTTGCCACGGGTTCAATGGATAAAACTGTGCACATATGGAAACTGGACAATAAGCAACCCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(26.3=83.3)
A:
PF0040027=WD40=PU(28.2=78.6)
C2:
PF0040027=WD40=PD(69.2=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]