DreEX6020964 @ danRer10
Exon Skipping
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11780880-11781275:+
Coord C1 exon
chr6:11780880-11780913
Coord A exon
chr6:11781049-11781089
Coord C2 exon
chr6:11781161-11781275
Length
41 bp
Sequences
Splice sites
3' ss Seq
TAATGACTTCTCCTTTGCAGGAT
3' ss Score
9.12
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATCAGTGGATAAGACCGTCACCGTGTATCAAGCT
Seq A exon
GATGAAGGCGTCTTACTTTACACACTTCACCAGCATGACAG
Seq C2 exon
GTATGTGACTGCCTGTGCATTTTCCCCCACGGCCCCTCTCATCGCCACAGGCTCCATGGACAAAAGCGTCAATATCTGGAGGATGGAGGAAGGCAGCAGTGCACAGGGTGAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(25.6=83.3)
A:
PF0040027=WD40=PU(28.2=78.6)
C2:
PF0040027=WD40=PD(69.2=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATAAGACCGTCACCGT
R:
TAACTCACCCTGTGCACTGCT
Band lengths:
146-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]