RnoEX6016953 @ rn6
Exon Skipping
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45935376-45937649:-
Coord C1 exon
chr3:45937616-45937649
Coord A exon
chr3:45935563-45935603
Coord C2 exon
chr3:45935376-45935482
Length
41 bp
Sequences
Splice sites
3' ss Seq
GTGATCATGTTGTCTTTCAGGGA
3' ss Score
10.47
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTCAGTGGATAAGTCTGTCATCATCTATGATATT
Seq A exon
GGAACTCAGAGTGTGCTGCACACGCTGACTCAGCATACCAG
Seq C2 exon
GTACGTCACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCGATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(25.6=83.3)
A:
PF0040027=WD40=PU(28.2=78.6)
C2:
PF0040027=WD40=PD(69.2=73.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGGATAAGTCTGTCATCA
R:
GGCAAGGTGTTTCCAGGTCAA
Band lengths:
138-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]