MmuEX6101452 @ mm10
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59862620-59864335:-
Coord C1 exon
chr2:59864302-59864335
Coord A exon
chr2:59862817-59862857
Coord C2 exon
chr2:59862620-59862726
Length
41 bp
Sequences
Splice sites
3' ss Seq
GTTACTCTGTTGTCTTTCAGGGC
3' ss Score
11.13
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GTCAGTGGATAAATCTGTCATCATACATGGTATC
Seq A exon
GGCCCTCAGAGTGTGCTACACACGCTGACTCAGCATACCAG
Seq C2 exon
GTATGTTACGACTTGTGCGTTTGCACCCAACACTCTCTTACTTGCTACTGGTTCAATGGACAAGACAGTGAACATTTGGCAGTTTGACCTGGAAACACCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(23.7=75.0)
A:
PF0040027=WD40=PU(28.2=78.6)
C2:
PF0040027=WD40=PD(69.2=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAAATCTGTCATCATACATGGT
R:
GGCAAGGTGTTTCCAGGTCAA
Band lengths:
133-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types