BtaEX0040250 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37199158-37235900:+
Coord C1 exon
chr2:37199158-37199335
Coord A exon
chr2:37208563-37208703
Coord C2 exon
chr2:37235720-37235900
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTAATTTCTTTTCAGAAT
3' ss Score
9.96
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCAAAGATCCCAGATCAACCAAAGCAATTTACTGAAAATTGGTCAGAGGATGATGTCTCAAACTGGCTTTGTGCCGAAGGTTTAGAAGACCTCGTTGATATTTTCAAAATGAATAACATTGATGGAAGAGAACTATTGAATCTTACAAAAGAAAGTCTAGCTGATGATTTGAAAATAG
Seq A exon
AATCTCTAGGGCTGCGTAGTAAAGTTCTAAGGAAAATTGAAGAACTGAGGACAAAGGTGAAAACCCTTTCTTCTGAAATTCCTGATGAATTTATATGTCCAATAACTAGGGAGCTTATGAAAGATCCTATCATCGCATCAG
Seq C2 exon
ATGGCTACTCATATGAAAAGGAAGCAATGGAAAATTGGATCAGCAGAAAGAAACGTACCAGTCCCATGACAAATCTTGTTCTTTCTTCAGTGATACTTACACCAAATAGGACTCTGAAAATGGCCATCGATCGATGGCTAAGTGAGACACATCAAAAATAAAACTCTATATTGTGTTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
83%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=81.7)
A:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
C2:
PF0456410=U-box=PD(69.9=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCAAACTGGCTTTGTGC
R:
CGATGGCCATTTTCAGAGTCCT
Band lengths:
254-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development