GgaEX6043387 @ galGal3
Exon Skipping
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38167695-38172914:-
Coord C1 exon
chr7:38172732-38172914
Coord A exon
chr7:38169236-38169376
Coord C2 exon
chr7:38167695-38167893
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATATTCCAATAACTTTTCAGAGT
3' ss Score
6.34
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAAACACTATAGAAAATGACTCTAAGATTAGAACTGCTGAGAACTGGTCAGAGGATGATGTTTCAGCCTGGCTTTGTGCACAAGGCTTCGCAGAACTTGTTGGGCTTTTCAAAGCAAATAACATCGATGGCAAAGAACTCGTGAATCTTACAAGAGAAAGCCTGATTCATGAATTAAAAATTG
Seq A exon
AGTCTCTTGGCCTGCGCAGTAAAATCCTCCAGAAGATCGAAGAGCTGAGGATGAAAATGGTCTCTGTTTCTGTTGCTGTTCCTGATGAATTCTTATGCCCTATAACACGGGAGCTCATGAAGGATCCTGTCATTGCAGCAG
Seq C2 exon
ATGGGTATTCCTATGAAAAGGAGGCAATGGAAAATTGGATCAGCAATAACAGACGATCTAGTCCCATGACAAATCTTCCTCTTCCCAGTCTTGTGCTTACACCCAACAGGACACTGAAAATGGCTATCAGCCGCTGGCTGGAGACTCAGCAGAAACAAGGCGAAACCACTTTGCTTTGAACTTGTTCACTAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-'15-21,'15-19,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=WD(100=75.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGAACTTGTTGGGCTTT
R:
CGCCTTGTTTCTGCTGAGTCT
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]