GgaEX6043387 @ galGal4
Exon Skipping
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36031359-36036578:-
Coord C1 exon
chr7:36036396-36036578
Coord A exon
chr7:36032900-36033040
Coord C2 exon
chr7:36031359-36031557
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATATTCCAATAACTTTTCAGAGT
3' ss Score
6.34
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAAACACTATAGAAAATGACTCTAAGATTAGAACTGCTGAGAACTGGTCAGAGGATGATGTTTCAGCCTGGCTTTGTGCACAAGGCTTCGCAGAACTTGTTGGGCTTTTCAAAGCAAATAACATCGATGGCAAAGAACTCGTGAATCTTACAAGAGAAAGCCTGATTCATGAATTAAAAATTG
Seq A exon
AGTCTCTTGGCCTGCGCAGTAAAATCCTCCAGAAGATCGAAGAGCTGAGGATGAAAATGGTCTCTGTTTCTGTTGCTGTTCCTGATGAATTCTTATGCCCTATAACACGGGAGCTCATGAAGGATCCTGTCATTGCAGCAG
Seq C2 exon
ATGGGTATTCCTATGAAAAGGAGGCAATGGAAAATTGGATCAGCAATAACAGACGATCTAGTCCCATGACAAATCTTCCTCTTCCCAGTCTTGTGCTTACACCCAACAGGACACTGAAAATGGCTATCAGCCGCTGGCTGGAGACTCAGCAGAAACAAGGCGAAACCACTTTGCTTTGAACTTGTTCACTAAAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-'21-37,'21-35,26-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=79.0)
A:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
C2:
PF0456410=U-box=PD(69.9=85.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAGAACTTGTTGGGCTTT
R:
CGCCTTGTTTCTGCTGAGTCT
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]