DreEX0085254 @ danRer10
Exon Skipping
Gene
ENSDARG00000090418 | wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061110-97]
Coordinates
chr6:11788627-11798468:+
Coord C1 exon
chr6:11788627-11788806
Coord A exon
chr6:11794570-11794704
Coord C2 exon
chr6:11797695-11798468
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTTGTGTTCACTCAGAGT
3' ss Score
7.81
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCAGGAAGGCTTGTGGTCACTCCAGACTGATGGTGAGCGAATGGTCTGAGGAAGAGGTGTTGGCATGGTTACGAGAGGAGGGGCTGGAGGCCGTGACTGACGCATTTAAATCCAATAACATCGATGGAGAAGAGCTACTCTCTCTCAGCAAGGAGACACTCAGCTCTGACTTGCACATTG
Seq A exon
AGTCTCTGGGCCTGCGGAGTAAAGTCATGAAGAAGATTGAGGAGTTGAAGATGGTGCCTGTCTATAACGGCACTCCTGACGAGTTTCTCTGTCCAATCACACGTGAGATCATGAAGGACCCTGTGATCGCTGCTG
Seq C2 exon
ACGGTTACTCGTATGAACGAGAGGCCATTGAGGCCTGGATCAGCACAAAGAACCGCACGAGTCCAATGACAAACCTGCCCCTGCAGACCACCCTTCTGACCCCCAACCGCACACTCAAAATGGCCATATTCAGATGGAGCACTTCTCAGTGATTTCAGATAATGCTGACCGCAGATCTGTCAGGTTACTACGACTAAAGACCCTGACAAGAATTCACTCCAGAACTGGATCGCCTTGGGACACTATATGTGAGATCAATTCAGACATTAGCATGCTGTAGATTTAGCACTTAAACTAAACGGGCTACGTAATGTCTCAGATCTGGACTCTTATTAGATTTAGCGCCGGCCTCCAACAGCAACGTGACCAGAGGCCTGTCACGTATACATTCATCATCATAACACAGCAGTGTCGAGTGGCCTTAAACATCATAATAAATGTTTATCATGCCCTCTCTGCTCCGTAGCGGACGGTTCGTTGGCGTATTTATGTGCTACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090418_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.120
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=80.3)
A:
PF0764712=SAM_2=PD(24.2=34.8),PF0456410=U-box=PU(29.6=45.7)
C2:
PF0456410=U-box=PD(69.0=96.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAGGTGTTGGCATGG
R:
GCCATTTTGAGTGTGCGGTTG
Band lengths:
257-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]