RnoEX0099525 @ rn6
Exon Skipping
Gene
ENSRNOG00000005990 | Wdsub1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:RGD Symbol;Acc:1359296]
Coordinates
chr3:45925008-45934258:-
Coord C1 exon
chr3:45934082-45934258
Coord A exon
chr3:45930641-45930781
Coord C2 exon
chr3:45925008-45925563
Length
141 bp
Sequences
Splice sites
3' ss Seq
GGTAACGGATTTTCTTTTAGAGT
3' ss Score
5.98
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAAGCGTAAGCGATCAGCTGAAACATTTCATTGAGGACTGGTCAGAGGAGGATGTCTCAAAATGGCTTCGTGCTCAAGGCTTGGAAGACCTCGTTGATATTTTCCGGACAAACAACATCGACGGGAAAGAACTATTGCACCTCACAAAGGAAAGTCTGGCTGGTGATATGAAAATCG
Seq A exon
AGTCTCTAGGTCTGCGCAGCAAAGTCCTGCGGAGTATTGATGAGCTCAGGACCAGGATGGAGTCCCTTTCTTCCGGAATCCCTGACGAGTTCATCTGCCCAATAACCAGGGAACTTATGAAGGACCCCGTCATCGCATCAG
Seq C2 exon
ATGGCTACTCCTACGAGAGAGAAGCAATGGAGAGTTGGATCCACAAGAAGAAGCGCACGAGCCCCATGACAAACTTGGCTCTTCCTTCACTGGTACTGACCCCAAACAGGACTCTGAAAATGGCCATCAATCGATGGCTAGAGACGCATCAGAAGTGAACCTGCCCACAGGCATCGGGTACACTGTCAGTGATGCCCTTCAGATGATTCAAAATGCTAAGCAGCCATTACAGAAGCAAATAAAAGGGAAGGACAGACGTTAAATCCAGTTACTTTTAAAAACTGTAAACTGTAAGCAGGTAAGTGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGGTCTCCATGAATTCCAGGCCAGCCTGGTCTATAGGGCGAGTTCCAGGACGGCAAGGCTACACAGAGAAACCCTGTCTCAAAAACCTAAAAGCAAAAAAAAAAAAAAAAAAAAAAGTCATTATCCTTAAAACACAGAATTATATATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005990-'18-25,'18-22,19-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(74.2=81.7)
A:
PF0764712=SAM_2=PD(24.2=33.3),PF0456410=U-box=PU(28.8=43.8)
C2:
PF0456410=U-box=PD(69.9=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGGCTTGGAAGACCTC
R:
TGATGCGTCTCTAGCCATCGA
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]