BtaEX0040897 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012615 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr2:52363824-52391333:+
Coord C1 exon
chr2:52363824-52364081
Coord A exon
chr2:52368960-52369031
Coord C2 exon
chr2:52391145-52391333
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAGATAATTTTCCCCCACAGAAG
3' ss Score
7.43
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGGTGAACTATGACAATGTAGTGGACACGGGTTCTGAAACTGATGAAGAAGACAAGCCTCAGATCGCTGAGGAGGACGGGATTGCTAACCCTCTGGACCAGGAGAGAAGTCCAGCTAGCGTGCCCAACCATGAGTCCTCCCCACACGTGAGCCAAGCTCTGTTGCCAAGAGAGGAAGAGGAAGATGAGATAAGAGAGGGTGGAGTGGAACATGCCTGGCACAACAGCGACATTCTACAAGCCTCTGTAGATGGGCCAG
Seq A exon
AAGAAATGAAGGAAGACTATGACACTATGGGGCCGGAAGCCACGATCCAGACCACAGTTAACAATGGTACAG
Seq C2 exon
TTAAGAATGCAAATTGCACATCAGACTTTGAGGAATACTTTGCCAAAAGAAAACTGGAGGAACGCGATGGTCATGCAGTCAGCATCGAAGAGTACCTTCAGCGCAGTGACACAGCCATCATTTACCCAGAAGCCCCCGAGGAGCTGTCTCGCCTTGGCACGCCAGAGGCCAATGGGCAGGAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012615-'9-7,'9-4,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGTTGCCAAGAGAGGA
R:
CCATCGCGTTCCTCCAGTTTT
Band lengths:
174-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development