RnoEX0100919 @ rn6
Exon Skipping
Gene
ENSRNOG00000004677 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:RGD Symbol;Acc:1307272]
Coordinates
chr3:29876545-29898374:-
Coord C1 exon
chr3:29898117-29898374
Coord A exon
chr3:29893022-29893093
Coord C2 exon
chr3:29876545-29876733
Length
72 bp
Sequences
Splice sites
3' ss Seq
AGATAATTTTCCCCCCACAGAAG
3' ss Score
7.3
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGGTGAACTATGACAACGTAGTGGACGCAGGTTCCGAAACAGACGAGGAGGACAAGCTGCACATTGCTGAGGATGACGGCATTGCAAACCCTCTGGACCAGGAGACGAGTCCAGCTAGCATGCCCAACCACGAGTCCTCCCCACACATGAGCCAAGGCCTGCTACCAAGAGAGGAAGAAGAAGACGAGATAAGGGAGAGCGTTGTGGAACACAGCTGGCACAGCGGTGAGATTCTGCAAGCCTCTGTAGACGGTCCAG
Seq A exon
AAGAAATGAAGGAGGATTATGATGCTCTGGGGCCAGAAGCCACGATCCAGACCACAATTAACAATGGTACAG
Seq C2 exon
TTAAGAATGCAAATTGCACATCAGACTTTGAGGAATACTTTGCCAAAAGAAAACTGGAGGAAAGAGATGGCCACGCAGTCAGCATTGAAGAGTACCTTCAGCGAAGCGACACGGCCATTATTTACCCAGAAGCCCCTGAGGAGCTGTCTCGCCTTGGCACGCCAGAGGCCAATGGGCAAGAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004677-'35-23,'35-18,37-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCGGTGAGATTCTGCAAG
R:
CCTCAGGGGCTTCTGGGTAAA
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]