MmuEX0052959 @ mm9
Exon Skipping
Gene
ENSMUSG00000026872 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:MGI Symbol;Acc:MGI:1344407]
Coordinates
chr2:44858036-44878624:-
Coord C1 exon
chr2:44878367-44878624
Coord A exon
chr2:44872917-44872988
Coord C2 exon
chr2:44858036-44858224
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAGATAATTTTCCCCCACAGAAG
3' ss Score
7.43
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGGTGAACTATGACAACGTAGTGGACGCAGGCTCGGAGACAGATGAAGAGGACAAGCTTCACATTGCTGAAGATGATAGCCTTGCAAACCCTCTGGACCAGGACACCAGCCCAGCTAGCATGCCCAACCATGAGTCCTCCCCACACATGAGCCAAGGGCTGCTACCAAGAGAGGAAGAAGAGGAGGAGCTAAGGGAGAGTGTTGTGGAGCACAGCTGGCACAGTGGCGAGATTCTGCAAGCCTCTGTAGCCGGTCCAG
Seq A exon
AAGAAATGAAGGAAGATTATGATGCAATGGGGCCAGAAGCCACGATCCAGACCACAATTAACAATGGTACAG
Seq C2 exon
TTAAGAATGCAAATTGCACATCAGACTTTGAGGAATACTTTGCCAAAAGAAAACTGGAGGAAAGAGATGGCCACGCAGTGAGCATCGAAGAGTACCTTCAGCGAAGCGACACGGCCATTATTTACCCAGAAGCCCCTGAGGAGCTGTCTCGCCTTGGCACGCCAGAGGCCAACGGGCAAGAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026872_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGTGTTGTGGAGCACAG
R:
GTCGCTTCGCTGAAGGTACTC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: