DreEX0086353 @ danRer10
Exon Skipping
Gene
ENSDARG00000078416 | zeb2b
Description
zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
Coordinates
chr6:1176840-1195448:-
Coord C1 exon
chr6:1195181-1195448
Coord A exon
chr6:1185234-1185302
Coord C2 exon
chr6:1176840-1177034
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTCTCTCTCTCAGATG
3' ss Score
13.25
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACAGTGCTGGACTTTGAGAACGTTGTAGAAACTGGATCGGAGACGGAAGAAGAAGACAGACTTTTGGTATCGGAGGAGGACGCTTTGCTTAATGGGGCGGGGAGTCCGGCCAGCCTTGTCAATCATGAGTCTGAGGCTCCGCCCTCTCCGACTCTGAGTCACACACTACTGAGGAAGACTGTGGATGATGAAGATGACATGAAGGACAGCGGCATAGAGAACGTTTGGCATGAAAATGACTTGCTGAATGCGTCAATCGATGGTACAG
Seq A exon
ATGAACTGAAGGCTGATTATGACACTATGGGGACCGATGTATCTCTGGAGCCCATTGGGAATGGTACAG
Seq C2 exon
TGAAGAGCGTTCACTGTGACACCGATTTCGAGGATTTCTTCGGGAAGCGTAAACTGGTGGACACTGAAAGTCACGTGGTCAGCATCGCCGAATACCTCCAGAGAGGAGACACAGCCATCATCTACCCTGAGGCGCCGGAGGAACTCTCCCGATCCCGGCTCGCCACTCCTGAAGCCACCGGACACGAGGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078416_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.799 A=0.875 C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGACAGCGGCATAGAGA
R:
CTCTCTGGAGGTATTCGGCGA
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]