GgaEX1065117 @ galGal4
Exon Skipping
Gene
ENSGALG00000012440 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr7:32830236-32842493:-
Coord C1 exon
chr7:32842234-32842493
Coord A exon
chr7:32836696-32836767
Coord C2 exon
chr7:32830236-32830424
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTGCATGCTTATTTCACAGAAG
3' ss Score
7.39
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AGTAGTGAACTATGAAAATGTAGTGGAAACGGGTTCAGAAACAGATGAGGAGGACAAGCTACACATCGCTGAAGACGAGAGTGCTATCAACACGCTGGACCAGGAAACCAGCCCAGCCAGTGTACCCAACCACGAGTCTTCCCCGCATGTGAGCCAAGCAGCGTTGCCCAGAGAGGAAGAGGAAGATGAAATGAGGGAAAGTGGAGTAGATCACGCCTGGCACAACAATGAGATCCTGCAAGCCTCTGTAGATGGTCAAG
Seq A exon
AAGAAATGAAGGAAGATTATGACACTATGGGGCCTGAAGCCGCAATTCAGACCACTGGAAACAATGGTACAG
Seq C2 exon
TTAAGAATGCAAATTGCACGTCGGACTTTGAGGAATATTTTGCCAAAAGGAAACTGGAGGAAGGAGATGGGCATGCAGTCAGCATAGCAGAGTACCTGCAGCGCAGCGACACAGCCATTATTTACCCCGAAGCCCCCGAGGAACTGTCTCGCCTTGGCACTCCAGAGGCCAATGGGCAAGAAGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012440-'3-6,'3-3,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.672
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGAGAGGAAGAGGAAG
R:
GACTGCATGCCCATCTCCTTC
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]