BtaEX0041208 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53804525-53817332:+
Coord C1 exon
chr10:53804525-53804643
Coord A exon
chr10:53804794-53804830
Coord C2 exon
chr10:53817287-53817332
Length
37 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTTCTAATTTCAGTTT
3' ss Score
7.81
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGGCATTACTCTAGTGTGCCTTAATTGTGACTTCCTAACTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATGAAACTCATGCTTGTCAAGTTGTAATAGAGAAAG
Seq A exon
TTTCTGTTTGTATCCCAACTTCTGAACATCTTTCTGA
Seq C2 exon
ATTAAAAAATGAAGCTCCCACAAAGGAACAAGAATCTGTGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486-'33-35,'33-31,34-35
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCCTAACTGATGTTTCTGGC
R:
TGTTCCTTTGTGGGAGCTTCA
Band lengths:
122-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development