MmuEX0053182 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72338746-72351570:+
Coord C1 exon
chr9:72338746-72338864
Coord A exon
chr9:72339012-72339048
Coord C2 exon
chr9:72351525-72351570
Length
37 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTTCTGATTTCAGTTT
3' ss Score
7.39
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGGCATTTCTCTAGTGTGCCTTAATTGTGATTTCCTAACTGACGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAGCATGAAACTCATTCTTGCCGAGTTCTAGTAGAGCAAG
Seq A exon
TTTCTGTTTGTATCCCAACTTCTGAACGTCTTTCTGA
Seq C2 exon
AATAAAAACTGAAGCTCCCACTAAGGGACAAGAACCTGTGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535-'49-62,'49-57,50-62
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.775
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAACTGACGTTTCTGGCT
R:
CACAGGTTCTTGTCCCTTAGTGG
Band lengths:
127-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types