HsaEX0073340 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56935150-56946701:-
Coord C1 exon
chr15:56946583-56946701
Coord A exon
chr15:56946396-56946432
Coord C2 exon
chr15:56935150-56935195
Length
37 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTTCTAATTTCAGTTT
3' ss Score
7.81
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGGCATTACTCTAGTGTGCCTTAATTGTGATTTCCTAAGTGATGTTTCTGGCTTAGATAATATGGCTACACACTTAAGTCAACATAAAACTCATACTTGCCAAGTTGTAATGCAGAAAG
Seq A exon
TTTCTGTTTGTATCCCAACTTCTGAGCACCTTTCTGA
Seq C2 exon
ATTAAAAAAAGAAGCTCCCGCAAAGGAACAAGAACCTGTGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAGTGATGTTTCTGGCTT
R:
GGTTCTTGTTCCTTTGCGGGA
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)