GgaEX0021122 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8661672-8688592:+
Coord C1 exon
chr10:8661672-8661790
Coord A exon
chr10:8661981-8662017
Coord C2 exon
chr10:8683555-8688592
Length
37 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATTCTTATTTTCAGTTT
3' ss Score
9.44
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AGGTGTGACTGTAGTATGTCTTAACTGTGATTTTCTGACTGATGGTTCTGGCTTAGATAGGATGGCCACACATCTGAGTGAAAGCCATACTCATGCTTGTCAAGTTATTATAGAGAATG
Seq A exon
TTTCTGTAGATTTACCAACTGCTGAACAAGTATCTGA
Seq C2 exon
CAAACAGGGGCTTGATTCTTCAGAGGAAACAAAAGAAGGCAATAGAAACCAAAATGAAGTTGCATCAGTTGAAAAGAATGAAGAAAACTCATCATTGTCAGACACAGAAAATGTTCCCAATTTGGAACTCCCTGATAACAGCACGAAGAAATCTTTGCATGGGAAAGGAACACGTTGTGATTCAGATCATCACAAACAATTAGTAGGAGAGAAACAAAAATGTATTCATGGAGAAAGTGAGTTGAAAACTTGCCAAAGTTCAGATTATGTTGTCTTGACTGATCAGACTAAAGTGCAAAACTTGGATAAAACTACACTTTCAGCAATGAATGCAAGGGACTTAAAGCTAACTTTGGGTGAAGATGTTAGTTTTGAGCAGTTCTTGCGAAAAAGAAATGAACCTGAATCAGTTAATTCAGACATGAGTGAACAAGGCAGTATTCATTTGGAGCCTTTGACTCCGTCAGAGGTACTAGAGCATGAAGCAACTGAAATTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_MULTIEX1-2/5=1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACTGATGGTTCTGGCTT
R:
TCCTCTGAAGAATCAAGCCCCT
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]