RnoEX0101202 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78925062-78938421:+
Coord C1 exon
chr8:78925062-78925180
Coord A exon
chr8:78925328-78925364
Coord C2 exon
chr8:78938376-78938421
Length
37 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTTCTGATTTCAGTTT
3' ss Score
7.39
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GGGCATTTCTCTAGTGTGCCTTAATTGTGATTTCCTAACTGACGTTTCTGGCTTAGATAATATGGCCACACACTTAAGTCAACATGAAACTCATACTTGCCAAGTTCTAGTAGAGAAAG
Seq A exon
TTTCTGTTTGTATCCCAACTTCTGAACGTCTTTCTGA
Seq C2 exon
ATTAAAAACTGAAGCTCCCACTAAGGGACAAGAATCTGTGTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'33-35,'33-33,34-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.154 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAACTGACGTTTCTGGCT
R:
CCTTAGTGGGAGCTTCAGTTT
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]