BtaEX0041212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53793548-53800354:+
Coord C1 exon
chr10:53793548-53793855
Coord A exon
chr10:53794382-53794522
Coord C2 exon
chr10:53800292-53800354
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTATCTCTATAAGGTA
3' ss Score
7.27
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAATCAGGATCTTCAACCACACCTTCCATTAGTGCAAGCACTTCTACCCTTCAGCTCTCACCTCCGAGGACTAAAAATATAACTGCTAAAAGTCCCACAAAATCCAACACAAGTAAACCTAATATAACTAAATCCATTGCAAGTAAACCTAATGCAAGTAAGCCTAATGGAAATAAACCTAAATACAAATCAAAAATATCTAATCTGCAGAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
Seq A exon
GTATCGTCGGGGAGTTCACAAGTGCATTGAGTGTTATTCTGAAATAAAAGATTTTGCAAACCACTTTCCTACATATGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAATCCTATGTGAATCATATGATGAG
Seq C2 exon
CTTTCATAGTAATCGTCCAAGTAAAAGGTTTTGTATCTTTAAGAAGTATTCAGAAGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCACCTCCGAGGACTAA
R:
CAAAACCTTTTACTTGGACGATTACT
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development