HsaEX0073336 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56950622-56959184:-
Coord C1 exon
chr15:56958877-56959184
Coord A exon
chr15:56958593-56958733
Coord C2 exon
chr15:56950622-56950684
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAATGTCTCCCTAAGGTA
3' ss Score
7.73
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTGCAATCAGGAGCTTCACCTACACCTTCCATTAGTGCAAGTGCTTCTACCCTTCAGCTCTCACCTCCAAGGACTAAAAATATAACTGCTAAAAATCCTGCAAAATCTAATACAAGTAAACCTAATACAGTCAAATCCAACGCAAGTAAACCTAATACAAGTAAGCCTAATGGAAGTAAATCTAAATACAAACCAAAAATCTCTAATATGCAAAAGAAACAAAGCACATTGGCTAGTAGCAATAAAAAAAGTAAAGTCAATACAGCATTGAGGAATTTAAG
Seq A exon
GTATCGTCGGGGCATTCACAAATGCATTGAGTGTTGTTCCGAAATAAAAGATTTTGCAAACCACTTTCCTACGTACGTCCACTGTAGTTTTTGCAGATACAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
Seq C2 exon
CTTTCATAGTAACCGTCCAAGCAAAAGGTTTTGTATTTTTAAGAAGCATTCAGAAAATCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTCTCACCTCCAAGGAC
R:
ACCTTTTGCTTGGACGGTTACT
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)