DreEX0088060 @ danRer10
Exon Skipping
Gene
ENSDARG00000077013 | znf280d
Description
zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
Coordinates
chr7:52468236-52469163:+
Coord C1 exon
chr7:52468236-52468447
Coord A exon
chr7:52468880-52469020
Coord C2 exon
chr7:52469101-52469163
Length
141 bp
Sequences
Splice sites
3' ss Seq
TATGTATTTATTTTTCACAGACT
3' ss Score
7.92
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
Exon sequences
Seq C1 exon
GTGACAATCCGAGCCTCGATTTCTGGTGCACCTATGAGCACTGAATCTTCAAGCAAATCCTACATCATACCCACAAGTCCTGAATCCACAAAACAACCTTTTAGAACATCACCAAACTCAACCAAACCAAACGTAAATGGAGGAAAAGCAAAGACCGCAAACCAGTTCAACTGGAACCGATGCCTCTACAACACTGAGCTTAAACGTCTAAA
Seq A exon
ACTTCCAAAGGGAGATAATAAGTGTATGGAGTGTCTCCATGATGTTGTGGACCCCTACATACATTATCCGTTATCGCTGAAGTGCAATAAATGCAAGTACAGATCAAGCTGCCAGAAAGCCTTCAGACAGCATATGATCAG
Seq C2 exon
GTTTCACCAGAATTCTACTAAAGTGCGGGTTGGCAAAGTGAAAAATCCTCCACGTGGTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077013-'20-24,'20-21,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.000 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAGCCTCGATTTCTGGT
R:
TTTGCCAACCCGCACTTTAGT
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]