GgaEX1003107 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7099004-7137592:+
Coord C1 exon
chr10:7099004-7099374
Coord A exon
chr10:7116758-7116898
Coord C2 exon
chr10:7133712-7137592
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCCATATTATGCTAGGTG
3' ss Score
7.84
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTACAGTTACTTCATTCAAGTCTGACAGTCACCATTATGTAACACCTGCCTCCAGTCCCAGTGCCATTCCTGTTTCATCAGTGTTTCAGTCTGTATCCAGATCTACAGCTAGCTCTGTAGCAGTTCAGCCATTGTCTAGACCAGTGAATGTTTCAGGAGCTTCACAGACACTGCAGAGACCAGTTGCTGGATGTTTATCAACACAGCAGATGACCCGGTCAAGCTCTGGACCATCACAGCCTGTTAGCAGACCTGTAACCATTCCAGTCACTACACAGCCAGTATCAAGAAATATCACGGTTCCTCTAGTGGCTCAACCCGTGTCCAGGCCATTGACTACTGTAACAACACAGCCTATCATACTCAATCAG
Seq A exon
GTGTCGTTTGGGAGCTCACAAATGCATTGAGTGTTACTCAGAAATAAAAGATTTTGCAAGCCACTTTCCTGCGTATGTCCATTGTAGCTTATGCAGATACAATACTAGCTGTAGCAAAGCCTATGTGAATCACATGATGAG
Seq C2 exon
CAAACAGGGGCTTGATTCTTCAGAGGAAACAAAAGAAGGCAATAGAAACCAAAATGAAGTTGCATCAGTTGAAAAGAATGAAGAAAACTCATCATTGTCAGACACAGAAAATGTTCCCAATTTGGAACTCCCTGATAACAGCACGAAGAAATCTTTGCATGGGAAAGGAACACGTTGTGATTCAGATCATCACAAACAATTAGTAGGAGAGAAACAAAAATGTATTCATGGAGAAAGTGAGTTGAAAACTTGCCAAAGTTCAGATTATGTTGTCTTGACTGATCAGACTAAAGTGCAAAACTTGGATAAAACTACACTTTCAGCAATGAATGCAAGGGACTTAAAGCTAACTTTGGGTGAAGATGTTAGTTTTGAGCAGTTCTTGCGAAAAAGAAATGAACCTGAATCAGTTAATTCAGACATGAGTGAACAAGGCAGTATTCATTTGGAGCCTTTGACTCCGTCAGAGGTACTAGAGCATGAAGCAACTGAAATTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_MULTIEX1-10/16=C1-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.000 C2=0.896
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(28.5=100)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000023225fB4208
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTTCCTCTAGTGGCTCAA
R:
ACGTGTTCCTTTCCCATGCAA
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]