MmuEX0053179 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72330866-72335109:+
Coord C1 exon
chr9:72330866-72331173
Coord A exon
chr9:72331293-72331433
Coord C2 exon
chr9:72335047-72335109
Length
141 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTATTTCTCCACAAGGTT
3' ss Score
5.93
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTACTATTCGAGCTTCAGTTGGACCTCTTCAGTCAGGATCTTCAGTTACACCTTCTATCAGCCCAAGCACTTCTACCCTCCAGCTCTCACCTCCAGAGCCTGACAATGTAACTGCTAAAAATCACGTGAAGTTGACTACAAGTACACCAAACACAACCATATCTGACCCCAGTAAAGCTAATGAGACCAAGTCTAATGGCAGTAAATCTAAAAACAAGTCAAAAGTCTCCAACATGCAGAAGAAACAAAGCACATTGTCTAGTAGTAATAAAAAAAGCAAAGTAAACACAGCACTAAGGAACTTAAG
Seq A exon
GTTACGTCGGGGTGTTCACGAGTGTATTGAGTGTTCTTCTGAAGTAAAAGATTTTGCAAACCATTTTCCTACATATGTCCACTGTAGTTTTTGCAGATATAACACTAGCTGTAGCAAAGCCTATGTAAATCATATGATGAG
Seq C2 exon
CTTTCATAGTAACCGTCCAAGTAAAAGATACTGTATATTTAAGAAGCATTCAGAAAATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX5-1/7=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCAGAGCCTGACAATGT
R:
ACAGTATCTTTTACTTGGACGGT
Band lengths:
253-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types