BtaEX0041565 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12674192-12724554:+
Coord C1 exon
chr17:12674192-12674295
Coord A exon
chr17:12720535-12720672
Coord C2 exon
chr17:12724383-12724554
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTCTTTTGGCCCAGAAA
3' ss Score
5.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCCTTTCTTTTCAGAAGATACCTTTAGACAATCACCATTCACCTCCAATTCAAAAGACCTGCTGCCCAGTGAATCTGTGCTTCACGGAAGAATATCAGCTCCAG
Seq A exon
AAACAGAAAAGATAGTCCTCGAGGCAGGAAACGGGTTGCCCTCCTGGAAATTCAACGACCAGCTCTTCCCCTGTGACGTGTGTGGGAAAGTATTTGGGCGGCAGCAGACGCTGTCCCGACACCTGTCTCTGCACACAG
Seq C2 exon
AGGAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGCGCAAACCTGAACCAGCACCTGACTGTCCACTCGGTGAAGCTGGTGAGCACGGACACCGAGGACATCGTCAGCGCCGTCACCTCCGAAGGCAGTGATGGGAAGAAGCACCCTTATTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.043 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=48.9)
C2:
PF139091=zf-H2C2_5=WD(100=41.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACAATCACCATTCACCTCCA
R:
AGGGTGCTTCTTCCCATCACT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development