RnoEX0101723 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32411145-32451077:-
Coord C1 exon
chr19:32450974-32451077
Coord A exon
chr19:32414703-32414840
Coord C2 exon
chr19:32411145-32411316
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACCTTGTTCTCTTGACCCAGAGA
3' ss Score
6.79
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CCCTTTCTTTTCAGAAGATACATTTAGACAATCACCATTCACCTCCAATTCAAAAGATCTGCTGCCCGGTGAACCCGTGCTGCATGGGAGAGTCTCCGCTCCAG
Seq A exon
AGACAGATAAGATCGTCCTTGAGGCAGGAAACGGACTGCCGTCCTGGAAGTTCAGTGACCAGCTCTTCCCTTGTGACGTGTGTGGGAAGGTGTTCGGCCGACAGCAGACATTGTCTCGGCACCTCTCCTTGCACACAG
Seq C2 exon
AGGAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCAAACCTGAACCAGCACCTGACCGTGCACTCTGTGAAGCTCGTGAGTACAGACACTGAGGACATAGTCAGTGCTGTCACCTCGGAAGGCAGTGATGGGAAGAAACACCCTTATTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-'17-25,'17-20,21-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.043 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=48.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGACAATCACCATTCACCTCCA
R:
AGGGTGTTTCTTCCCATCACTG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]