GgaEX1065631 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30668901-30690707:-
Coord C1 exon
chr4:30690604-30690707
Coord A exon
chr4:30670612-30670749
Coord C2 exon
chr4:30668901-30669072
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTATTTTGGCATAGAAA
3' ss Score
5.98
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CCCTTACTTTTCTGAGGACACCTTTAGACAATCACCGTTCACTTCCAACTCAAAAGATCTCCTGCCTAATGAAACTGCTCTTCATGGAAGGACATCTGCACCAG
Seq A exon
AAACAGAAAAGCTAGGGTTGGAAGCAGGAAACGGATTGCCATCGTGGAAATTTAATGACCAGCTCTTTCCCTGTGAAGTGTGTGGAAAAGTGTTTGGTCGACAGCAGACTTTGTCGCGACATCTCTCGCTGCACACAG
Seq C2 exon
AAGAGAGAAAATACAAATGCCACTTGTGCCCCTACGCTGCTAAGTGCCGTGCTAATCTGAACCAGCACCTGACCGTTCATTCTGTGAAGCTGGTGAGTACAGACACTGAGGACATTGTCAGCGCTGTCACTTCCGAAGGCAGTGATGGAAAGAAGCACCCTTACTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'17-18,'17-16,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.149 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=48.9)
C2:
PF139091=zf-H2C2_5=WD(100=41.4),PF058767=Terminase_GpA=PU(29.5=67.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCTTTAGACAATCACCGT
R:
TCTTTCCATCACTGCCTTCGG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]