MmuEX0053645 @ mm9
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81660459-81702978:+
Coord C1 exon
chr8:81660459-81660562
Coord A exon
chr8:81699732-81699869
Coord C2 exon
chr8:81702807-81702978
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTCTCTTGGCCCAGAGA
3' ss Score
5.88
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCCTTTCTTTTCAGAAGACACATTTAGACAATCACCATTCACCTCCAATTCAAAAGATCTGCTGCCTGGTGAATCTGTGCTGCACGGAAGAGTGTCTGCTCCAG
Seq A exon
AGACCGAGAAGATTGTCCTTGAGGCAGGAAACGGACTGCCATCCTGGAAATTCAATGACCAGCTCTTCCCTTGCGATGTGTGTGGGAAAGTGTTCGGACGACAGCAGACATTGTCTCGACACCTCTCATTGCACACAG
Seq C2 exon
AGGAAAGAAAATACAAATGCCACTTGTGCCCCTATGCTGCTAAGTGCCGTGCGAACCTGAACCAGCATCTGACCGTGCACTCTGTGAAGCTCGTGAGTACCGACACCGAGGACATAGTCAGTGCTGTCACTTCTGAGGGCAGTGATGGGAAGAAACACCCGTATTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'10-14,'10-12,11-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.042 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=48.9)
C2:
PF139091=zf-H2C2_5=WD(100=41.4),PF058767=Terminase_GpA=PU(36.9=70.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACAATCACCATTCACCTCCA
R:
ACGGGTGTTTCTTCCCATCAC
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: