DreEX0088313 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35304603-35321365:-
Coord C1 exon
chr1:35321265-35321365
Coord A exon
chr1:35306847-35306984
Coord C2 exon
chr1:35304603-35304941
Length
138 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTTTATGTCACCAGATC
3' ss Score
6.5
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCCTTTCCTTGATGACCGCTTTAGACAATCACCTTTCAGCACTCGCTCCAAGAGCTCTTCCCCAGCTGAAGCCGGATCTTCAAGCAGGGTTCCCCAGCAAG
Seq A exon
ATCCAGAGAAGGTGAGTAGTGAGCCAGGAAATGGACTTTCCCAATGGAGACTCAACGAACAGCTCTTTCCCTGCCCTGTGTGTGGCAAAGTGTTTGGTCGCCAACAGACTCTCTCCAGGCATCTCTCCTTACACACAG
Seq C2 exon
AAGAGAGGAAATACAAGTGTCATTTGTGTCCATATGCAGCTAAGTGCCGAGCCAACCTCAACCAGCACCTCACCATCCACTCAGTCAAACTGGTGAACACAGATGTCGAGCAGATTGTTACCGCTGTTACCAACGATGGCCCAGAGCTCAAAAACTGCCCCTACTACTACAGCTGCCATGTCTGCGGCTTCCAGACAGAGTTCAATGCTCAGTTTGTCAGTCATATGTCTCTTCATGTGGACAAAGAGCAGTGGATGTTTTCTCTCTGCTGTAGCACCTGTGAGTATGTGGGTGTGGACGAGGCCGAGATGAAAGCTCACATCAGTGCAGGGCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-'11-12,'11-11,12-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.255 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
PF0009621=zf-C2H2=WD(100=48.9)
C2:
PF139091=zf-H2C2_5=WD(100=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCCTTGATGACCGCTT
R:
CTCTGGGCCATCGTTGGTAAC
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]