BtaEX0041567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12600193-12625708:+
Coord C1 exon
chr17:12600193-12600365
Coord A exon
chr17:12606088-12606568
Coord C2 exon
chr17:12625475-12625708
Length
481 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGCTTCTCCGTCAGGTT
3' ss Score
7.61
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CCTCAGAAGAGGAAAGCGGAAAGCCTTTCCAGTGTCCCATATGCGGTCTGGTTATAAAACGGAAGAGTTACTGGAAGCGGCACATGGTGATTCACACAGGTTTAAAAAGTCATCAGTGTCCGCTCTGTCCGTTCCGATGTGCTCGCAAGGACAATCTCAAATCCCACATGAAG
Seq A exon
GTTCATCAGCACCAGGACCGGGGAGAGACCTTTCAGTGCCAGCTCTGCCCTTTCACTTCCTCCCGCCACTTCAGCCTGAAGCTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAAGCCAAGGTGAAGGAGGAGACCCCAGACCCCGAGGCCAAGGGGCCTCCCCACCTCAGTGACAGTGCCTGCCTGGGGCAGCAAAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCATGATGAAGTCCAGCACTCCAGAGAGGACTAGCCAGGGTGGGGCTGGCGTCTCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCAACCTCCTTTCCTCTGAATGCTACCGACAGGCCAGCCAACCACACAAAGCTGAGAGAGCCCTCCGAGTTCGCGGCCAACAGTGCGTCCGCGTTGTTCAGCCAGGACATCTCTGTTAAGATGGCGTCTGATTTTCTCATGAAGCTGTCAG
Seq C2 exon
CTGCAAATCAGAAGGAGCCCATGAATCTCAATTTTAAAATAAAAGAGGAGCCTAAGGAAGAGGAGACCCTAAGCGTCACATTGCCTCGGTCCAGCTATGTGTTCAGCCCCGAGTCTGAAGTGTCAGCCGCGAGCATCTCTGAGGACACGCTTAAGCCCCAGGAAGCAAAGGGCAACGTGCTAAGACGGGATATGTCAGTTAAAGCAGCATCGGAACTTCTCATGAAACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'3-3,'3-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.658 C2=0.557
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=44.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCTTTCCAGTGTCCCA
R:
CGTCTTAGCACGTTGCCCTTT
Band lengths:
342-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development