MmuEX0053648 @ mm9
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81594270-81615965:+
Coord C1 exon
chr8:81594270-81594442
Coord A exon
chr8:81599957-81600437
Coord C2 exon
chr8:81615732-81615965
Length
481 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTGCTTCTCCGGCAGGTT
3' ss Score
10.15
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CCCCAGAAGAAGAAAGCGGGAAGCCATTCCAATGTCCAATATGTGGTTTGGTTATAAAAAGGAAGAGTTACTGGAAGCGGCACATGGTGATTCACACGGGCTTAAAGAGTCATCAGTGTCCACTCTGTCCATTCCGGTGTGCTCGCAAGGACAATCTCAAATCCCACATGAAG
Seq A exon
GTTCATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCAGCCTGAAACTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCCAGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCGTTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCTTGAATGCTGCCGACAGGCCCGCCAACCACACAAAGCTGAAAGACCCCTCCGAGTATGTGTCCAACAGTGCAGCAGTATTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAG
Seq C2 exon
CTGCAAACCAGAAGGAGCCTATGAATCTTAATTTTAAAGTGAAGGAGGAGCCCAAGGAAGAGGAGTCCCTGAGCATGCCTTTGCCTCGCTCCAGCTACGTGTTCAGCCCGGAACCGGAAGTGTCTACCCCAAGCGTCTCCGAGGACCCACTTACACCCCAGGAAGGCAAGGGGAGTGTGTTAAGGCGGGACATGTCGGCCAAGGCTGCCTCAGAACTTCTCATGAAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'2-3,'2-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.634 C2=0.772
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=26.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAAGAAAGCGGGAA
R:
CCTTAACACACTCCCCTTGCC
Band lengths:
357-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: