DreEX6032220 @ danRer10
Exon Skipping
Gene
ENSDARG00000076171 | znf827
Description
zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
Coordinates
chr1:35346375-35378527:-
Coord C1 exon
chr1:35378355-35378527
Coord A exon
chr1:35372775-35373273
Coord C2 exon
chr1:35346375-35346602
Length
499 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTTTGTCTTCTCAGGTC
3' ss Score
11.76
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTTCTCCTGAGGATGGAGGAAAGCCCTTTCAGTGTCCGGTATGCGGTCTGGTCATCAAGAGAAAGAGCTACTGGAAGAGACATATGGTGATCCATACAGGCTTAAAAAGCCACCAGTGTCCCCTCTGTCCCTTTCGCTGTGCTCGTAAAGACAATCTCAAGTCCCACATGAAG
Seq A exon
GTCCATCAGCACCAAGACCGAGGGGAGACGTTCCAGTGTGAGCTCTGCCCCTTCACATCCTCCCGCCACTTTAGCCTCAAGCTGCACATGCGTTGCCATCAGCACTTCCCTCGTCCCGACCTCAAAGTCAAAGAAGAACCCGGCACAGACACCGAGGAGGGCGAGGGCTTGCTCATGGGGGACGGTGGAGCGGCTGGTGATCAGGCCATGAACACAGATGCTTCTACGTCTCCCACTGTGAGCCAACCCGACGCTCGTTTGCTGGCCTCTCCTGCAGAACCCTCAAACCACGTCCAGATCAAGGAGGAACCACAGGAGAGGGATGTGTCTGTGATGTCTCCCTTTGCCCTGTGTAGGGAGAGGCCGAGCAGCAGCAGCAGTTCTCTGGATCTGTCCGGGCTTAAATCTAGTCCACCGGGGCCCGGGCCTACAGCTGCTTCACTCTTCAGCCCAGATATCACCACCAAGACGGCTACAGACCTCCTCATAAAGCTCTCGG
Seq C2 exon
CAGCGAACCAGAAGGAGGCCCTAAAGGGTCCATACTGTGTCAAGGAAGAGCCCCAGGCGGAGGAGCCCCTGAACTCTCAGAGGGGACCCAGCTACAGCTTCTGCCAAGAAGGACCTCCAGGAGCCACCAAACCAAGAGAGGAGGGGAGCCCGATGTTGGGCAAGAGCAGCCTTCTCAGCCAGGACATCAACGTCAAAGTGGCCTCTGAATTGCTTATGAAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076171-'6-4,'6-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.766 C2=0.662
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=44.8),PF134651=zf-H2C2_2=PU(20.7=10.3)
A:
PF134651=zf-H2C2_2=PD(72.4=12.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCAGTGTCCGGTATGC
R:
GACGTTGATGTCCTGGCTGAG
Band lengths:
344-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]