GgaEX0014819 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30708557-30731711:-
Coord C1 exon
chr4:30731539-30731711
Coord A exon
chr4:30720685-30721165
Coord C2 exon
chr4:30708557-30708790
Length
481 bp
Sequences
Splice sites
3' ss Seq
TCTTTCACCTCTTGAACCAGGTT
3' ss Score
7.48
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCTCAGAAGAAGAAGGAGGAAAACCTTTCCAGTGTCCAATCTGTGGTTTGGTTATCAAGAGGAAGAGTTACTGGAAACGGCACATGGTGATTCATACAGGTTTGAAAAGTCATCAGTGTCCGCTCTGTCCATTTCGCTGTGCGCGTAAGGACAATCTCAAATCACACATGAAG
Seq A exon
GTTCATCAGCACCAGGACAGGGGTGAGACCTTTCAATGCCAGCTATGCCCTTTTACCTCCTCCCGCCACTTCAGCCTGAAACTCCATATGCGTTGCCATCAGCATTTCCTCAGGACAGAATCCAAAGTGAAGGAGGAAATACCAGAAACTGAGGTGAAGGGGTCACCACAGCTAAATAGTGACTCCTGCCCGGGACCACAGAGGGAAGGAGTTGGACCTGACCTTATGGGATCAGCATCTGTATCTAAAACATCTGATGTGGCTGGGCAGGCTAGTGGAGGTATTCCACCTTTACTAGTGAAAGAAGAGCCCAAAGATGACAATGGCATCTCAGCTGCACCTTTTGCTCTTAGCACTGTTGACAGAGCCCCCAACAACACAAAGCTGAAAGACTCTGACTTTGTGGCCAGTACAGCATCAGCACTATTCAGCCAAGACATCTCTGTCAAGATGGCATCAGATTTTCTTATGAAGCTGTCAG
Seq C2 exon
CTGCAAATCAAAAAGAGCCCTTGACTCCAAAGTTTAAAGTGAAAGATGAGCCTAAGGATGAAGAAGCTGCAAGTTCAACCTTGCCTCAGTCCAGCTATGTGTTCAACCAGGAATCCGAAGCCTCAGCTCCCAGTGCACCTAAGGAGAAACTCAAGCCACAGGAAGCACAGGCAAATATGATGAGGCAGGACATATCAGTCAAGGCAGCGTCTGAGCTCCTCATGAAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'5-10,'5-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.584 C2=0.759
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=44.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGTTACTGGAAACGGC
R:
GCTTCATGAGGAGCTCAGACG
Band lengths:
342-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]