RnoEX0101725 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32497327-32518940:-
Coord C1 exon
chr19:32518768-32518940
Coord A exon
chr19:32512909-32513389
Coord C2 exon
chr19:32497327-32497560
Length
481 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTGCTTCTCTGGCAGGTT
3' ss Score
10.21
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CCCCAGAAGAAGAAAGCGGGAAGCCATTCCAATGTCCAATATGTGGTCTGGTTATAAAAAGGAAGAGCTACTGGAAGCGGCATATGGTGATCCACACAGGCTTAAAAAGTCATCAGTGTCCCCTCTGTCCATTCCGGTGTGCTCGCAAGGACAATCTCAAATCCCACATGAAG
Seq A exon
GTTCATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCAGCCTGAAACTACACATGCGCTGTCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCTAGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCGTTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCCTGAATGCTGCCGACAGGTCCGCCAACCACACAAAGCCGAAAGACCCCTCCGAGTTTGTGCCCAACAGTGCGGCAGCATTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAG
Seq C2 exon
CTGCAAACCAGAAGGAGCCTATGAATCTTAATTTTAAAGTGAAGGAGGAGCCCAAGGAAGAGGAGACCCTAAGCATGCCTTTGCCTCGCTCCAGCTACGCGTTCAGCCCGGAACCGGAAGTGGCGACCCCTAGCATCTCCGAGGACCCACTTACACCCCAGGAAGGCAAGGGGAATGTGTTAAGGCGGGACATGTCAGCCAAGGCTGCCTCAGAACTTCTCATGAAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-'6-12,'6-10,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.596 C2=0.785
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=44.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAAGAAGAAAGCGGGAA
R:
AACACATTCCCCTTGCCTTCC
Band lengths:
353-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]