BtaEX6000205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017839 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:3603643-3615147:+
Coord C1 exon
chr1:3603643-3603867
Coord A exon
chr1:3605819-3606004
Coord C2 exon
chr1:3615001-3615147
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCGTGTTTTCACCACTCTAGATC
3' ss Score
9.22
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACCACCAGCCAGACGGAGCTGGAGAACTGGATCACCGCCATCCACTCTGCTTGCGCGGCTGCTGTGGCAAGACACCACCACAAAGAGGACACGCTCCGGCTGCTGAAGTCGGAGATCAAAAAACTGGAACAGAAGATTGACATGGACGAGAAGATGAAGAAAATGGGCGAGATGCAGCTGTCTTCCGTCACGGATTCAAAGAAGAAGAAAACTATATTAGATCAG
Seq A exon
ATCTTTGTCTGGGAGCAGAATCTTGAGCAGTTCCAAATGGACCTGTTTCGGTACCGCTGTTACCTAGCCAGCCTCCAAGGCGGGGAGCTGCCCAACCCTAAAAGGCTACTTGCCTTTGCAAGCCGACCAACCAAAGTGGCAATGGGCCGCCTTGGAATTTTTTCCGTGTCATCTTTTCATGCCCTG
Seq C2 exon
GTGGCTGCCCGCACTGGTGAAACTGGAGTCAGAAGACGTACTCAGGCCATGTCACGATCCGCAAGCAAGAGAAGGAGCAGGTTTTCTTCTCTTTGGGGTCTGGACACTACCTCTAAAAAGAAGCAGGGACGCCCAAGCATCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017839-'29-14,'29-13,31-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.429
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.8=24.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACTGGATCACCGCCATC
R:
TGACATGGCCTGAGTACGTCT
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]