Special

MmuEX0047315 @ mm10

Exon Skipping

Gene
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89860205-89867734:-
Coord C1 exon
chr16:89867510-89867734
Coord A exon
chr16:89865234-89865419
Coord C2 exon
chr16:89860205-89860351
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCCCACGACTGTAGATC
3' ss Score
7.27
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACCACGAGCCAGACAGAGCTGGAGAACTGGATCACCGCCATCCACTCTGCCTGCGCAGCTGCCGTCGCAAGGCACCACCACAAGGAGGACACGCTCCGCCTCCTCAAGTCGGAAATCAAGAAGCTGGAGCAGAAGATCGACATGGACGAGAAGATGAAGAAGATGGGGGAGATGCAGCTGTCTTCCGTCACCGACTCGAAGAAGAAGAAGACCATCCTAGACCAG
Seq A exon
ATCTTCGTTTGGGAGCAGAACCTCGAACAGTTCCAGATGGACCTGTTCCGATTCCGCTGTTACCTCGCCAGCCTCCAGGGCGGGGAGCTGCCAAACCCCAAAAGGCTGCTTGCTTTTGCGAGCCGGCCCACGAAGGTGGCCATGGGCCGCCTCGGGATCTTCTCCGTGTCATCTTTTCATGCCCTG
Seq C2 exon
GTGGCAGCCCGGACTGGTGAGATCGGAGTGAGAAGGCGTACTCAGGCCATGTCCAGGTCTGCAAGCAAGCGAAGGAGCAGGTTTTCTTCTCTCTGGGGCCTAGACACTACCTCCAAAAAGAAGCAGGGACGCCCAACCATCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.067 A=0.000 C2=0.347
Domain overlap (PFAM):

C1:
PF0016924=PH=PD(15.8=24.0)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTCCTCAAGTCGGAAATC
R:
GAGGTAGTGTCTAGGCCCCAG
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types