DreEX0078831 @ danRer10
Exon Skipping
Gene
ENSDARG00000078430 | tiam1a
Description
T-cell lymphoma invasion and metastasis 1a [Source:ZFIN;Acc:ZDB-GENE-080325-1]
Coordinates
chr10:25653878-25659253:-
Coord C1 exon
chr10:25659029-25659253
Coord A exon
chr10:25656742-25656927
Coord C2 exon
chr10:25653878-25654024
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTGTGTTCAGATA
3' ss Score
11.27
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
ACATCAGGTCAGACTGAGCTGGAAAACTGGATAACTGCTATCCACTCAGCCTGTGCGGCAGCCGTCGCCCGCCAGCACCACCGCGAGGACACGGTACGTTTGCTGCGCTCTGAAATCAAGAAGCTTGAACAGAAGATTGACATGGATGAGAAAATGAAGAAGATGGGCGAAATGCAGCTTTCTGCAGTCACTGATGGGAAGAAGAGGAAGACTATCCTTGATCAG
Seq A exon
ATATTCCTCTGGGAGCAGAATTTGGAGCAGTTTCACATGGACTTGTTTCGGTATCGCTGTTACCTGTCCAGCCTGCAGGGTGGCGAACTTCCAAATCCAAAACGCCTACTTGCTGTTGCTTCCCGTCCCACCAAACTGTCCATGGGTCGTCTTGGCATTTTTTCAGTGTCATCCTTTCACGCCCTG
Seq C2 exon
GTGGCTGCGAGGACGGACGGGGGGATTCGTAGACGCACCCAAGCCTTGTCTCGCTCCTCCAGCAAACGAAAAAGCCGTTTCTCCTCGCTGTGGGGCCTGGACACTACCTCAAAAAAGAAAACCAAAGGCAGACCCAGCATTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078430-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.056 C2=0.367
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.8=24.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGCTGCGCTCTGAAATC
R:
TTTGAGGTAGTGTCCAGGCCC
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]