GgaEX0023257 @ galGal4
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103845385-103849555:-
Coord C1 exon
chr1:103849331-103849555
Coord A exon
chr1:103847710-103847895
Coord C2 exon
chr1:103845385-103845531
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCGATCTTTTCTGTGTACAGATT
3' ss Score
7.87
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACCTCTAGCCAGACCGAACTCGAGAACTGGATCACTGCAATCCATTCAGCTTGTGCAACCGCGGTTGCAAGGCAGCATCACAAAGAGGACACTGTCAAGCTCCTGAAAACAGAGATAAAAAAGCTGGAGCAGAAGATCGATATGGATGAGAAGATGAAGAAAATGGGTGAAATGCAGCTGTCCTCAGTAACGGACTCCAAGAAGAAGAAGACTATACTGGATCAA
Seq A exon
ATTTTTGTTTGGGAGCAAAATCTCGAGCAGTTCCAGATGGATCTATTTCGGTACCGCTGTTACTTGGCTAGTCTCCAAGGAGGGGAGCTCCCAAACCCTAAAAGACTGCTTGCTTTTGCCAGCCGTCCAACTAAAGTTGCAATGGGCCGCCTTGGAATCTTTTCAGTCTCTTCGTTCCATGCACTG
Seq C2 exon
GTGGCGGCTCGCACAGGGGAGTCCGGTGTGAGGAGAAGGACGCAAGCCATGTCCAGATCTGCCAGTAAACGGAGAAGCAGGTTTTCTTCTCTCTGGGGGCTGGATACTACCTCGAAGAAAAAACAAGGGAGGCCAAGCATTAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842_MULTIEX3-2/3=C1-3
Average complexity
ME(1-2[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.362
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.8=24.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACTGTCAAGCTCCTGA
R:
GGTAGTATCCAGCCCCCAGAG
Band lengths:
251-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]