HsaEX6005903 @ hg19
Exon Skipping
Gene
ENSG00000156299 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:11805]
Coordinates
chr21:32589869-32598266:-
Coord C1 exon
chr21:32598042-32598266
Coord A exon
chr21:32595722-32595907
Coord C2 exon
chr21:32589869-32590015
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCGTGTTTTCACTACCATAGATC
3' ss Score
8.7
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACCACTAGCCAGACGGAGCTTGAAAACTGGATCACCGCCATCCACTCTGCCTGCGCCACTGCGGTCGCGAGGCACCACCACAAGGAAGACACGCTCCGACTCCTGAAATCAGAGATCAAAAAACTGGAACAGAAGATTGACATGGATGAAAAGATGAAGAAAATGGGTGAAATGCAGCTGTCTTCAGTCACTGACTCAAAGAAAAAGAAAACAATATTAGATCAG
Seq A exon
ATCTTTGTCTGGGAGCAAAATCTCGAGCAGTTCCAAATGGACCTGTTTCGTTTCCGCTGTTATTTAGCCAGCCTTCAGGGTGGGGAGCTGCCAAACCCCAAAAGGCTTCTCGCTTTTGCAAGTCGACCAACGAAAGTGGCCATGGGCCGCCTTGGAATCTTTTCGGTATCATCGTTTCATGCCCTG
Seq C2 exon
GTGGCAGCACGCACTGGTGAAACTGGAGTGAGAAGACGTACTCAGGCCATGTCCAGATCCGCGAGCAAGCGAAGGAGCAGGTTTTCTTCTCTGTGGGGTCTGGATACTACCTCCAAAAAGAAGCAGGGACGGCCAAGCATCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156299-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.408
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(15.8=24.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGATCACCGCCATCC
R:
TGGCCTGAGTACGTCTTCTCA
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)