BtaEX6000788 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53592856-53598345:-
Coord C1 exon
chr1:53598169-53598345
Coord A exon
chr1:53596329-53596474
Coord C2 exon
chr1:53592856-53592946
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATAACATCTCCTTTTGTCAGCTT
3' ss Score
5.93
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCAAGAACCTGCTTGAGGAGGTGGAGTCTCTCAATGAGGATGTGAGCAAACTGCATCGAGCAGCCAGGGCTGCACAGGAGACCCACCAGCAGACCCTGGAGGACTTGCGCAACGAGGAGGAGAAAGTCCACACCCTAAGCAAGGCCAAGTTGACGCTGGAGCAGCGAGTGAATGAG
Seq A exon
CTTGAGGGTGCCCTTGAGCAGGAGAGCAAAGCAAGAATGAACTGTGAGAAGGAAAAGTGCAAAGTGGAGGGCGAGTTAAAGCTGAACCAGGAGAGCATGGACGACCTGGAGAGCAGGCAACTGCAACTAGCAGAAAAGCTGAGGAG
Seq C2 exon
GAAAGAATTAGAAATGAATCAGATGAGGTCGAAGGTGGAGAATGAGAAAAGCCTGGTGGCTCAGCTTCAGAAGACGGTTAAAGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=0.816 C2=0.581
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(26.2=100),PF087025=Fib_alpha=PU(15.5=30.5)
A:
PF0157614=Myosin_tail_1=PD(14.9=67.3),PF087025=Fib_alpha=FE(41.4=100),PF131661=AAA_13=PU(25.5=71.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF087025=Fib_alpha=FE(25.9=100),PF131661=AAA_13=FE(21.9=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGAGGAGGTGGAGTCTC
R:
GTCTTCTGAAGCTGAGCCACC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]