DreEX0048377 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24957359-24959199:-
Coord C1 exon
chr11:24959023-24959199
Coord A exon
chr11:24958784-24958929
Coord C2 exon
chr11:24957359-24957449
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTATAATGCCTTTGTTTTAGTTG
3' ss Score
6.42
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTGAAGAATCTGATAGAAGAGATGGCAGCTTTGGATGAAACTATACTGAAGCTCACCAAAGAGAAAAAAGCCCTACAGGAGAGTCACCAGCAGACCTTGGACGACTTGCAGACAGAGGAAGACAAAGTCAATACTCTGACTAAGGCCAAAGCCAAGTTGGAGCAGCAAGTTGATGAT
Seq A exon
TTGGAGGGCTCCTTAGAACAGGAAAAGAAATTGCGAATGGATCTGGAACGTTCAAAACGCAAGCTGGAGGGCGATCTGAAGCTGTCAATGGAGTCTGTCATGGACCTCGAAAATGACAAGCAGCAATTAGAGGAAAAGCTAAAGAA
Seq C2 exon
GAAAGATTTTGAAATGAACCAGATCAGTTCAAAAATCGAAGATGACCAAGTGCTAATCATCCAGCTTCAAAAGAAGATCAAGGAACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=0.796 C2=0.129
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.6=100)
A:
PF0157614=Myosin_tail_1=PD(1.0=4.1),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGCAGCTTTGGATGA
R:
TGCAGTTCCTTGATCTTCTTTTGA
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]