RnoEX6019874 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151144746-151145436:+
Coord C1 exon
chr3:151144746-151144922
Coord A exon
chr3:151145005-151145150
Coord C2 exon
chr3:151145346-151145436
Length
146 bp
Sequences
Splice sites
3' ss Seq
AGCCCTACTCTACCCCACAGCTG
3' ss Score
6.66
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
GTGAAGAACCTGACAGAGGAGATGGCTGCCCTGGACGAGTCCGTGGTCCGCCTGACTAAGGAGAAGAAGGCGTTGCAGGAGGCTCACCAGCAGGCTCTGGGTGACCTGCAGGCTGAAGAGGACCGTGTGAGTGCGCTGGCCAAGGCCAAGATCCGGTTGGAGCAGCAAGTAGAGGAC
Seq A exon
CTGGAGTGCTCCCTGGAGCAAGAGAAGAAGCTTCGCATGGATACAGAACGTGCCAAGCGCAAGCTCGAAGGAGACCTGAAGCTGACGCAGGAGACAGTGACAGACACCACACAAGACAAGCAGCAGCTGGAGGAGAAGTTGAAGAA
Seq C2 exon
GAAGGATTCAGAGCTGAGTCAGCTGAGCCTGCGGGTGGAGGATGAGCAGCTCCTGGGGGCGCAGTTGCAGAAGAAGATCAAGGAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=0.816 C2=0.097
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(25.1=100)
A:
PF0157614=Myosin_tail_1=PD(15.6=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACAGAGGAGATGGCTG
R:
ATCTTCTTCTGCAACTGCGCC
Band lengths:
248-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]